1) My patent lawyer, following Alice, told us to not even try for most patents we were previously considering, because patents like that would just get rejected. I'd believe acceptance rates have gone up, but that's because people aren't filing as many frivolous patents.
2) The back-and-forth process with the patent office the EFF advocates for is a really bad idea and bad deal. Big companies can hire specialists who do this. For individual inventors, the costs here get astronomical.
Now, the bar for patents is still way too low. But Alice did bring it up. If I had my druthers:
* The bar for patents would be high.
* The processes for applying for patents would be straightforward, quick, and easy.
There would be an appeals process, but it'd look much more like sending a plain-language letter than one couched in byzantine process and baroque terminology.