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I've seen a of lot enigeers that don't understand fundamentals and it causes a lot of problems in real-world software. These are my goto recommendations:

Code Complete: A Practical Handbook of Software Construction, Second Edition

Clean Code: A Handbook of Agile Software Craftsmanship

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It's weird that you mention a book like Clean Code to a person worried about potential gaps in their CS education. I mean, they don't teach it at universities, right? Chances are, if he's self taught he knows Clean Code better than average graduate.

Exact two books I recommend people (only in reverse order).

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