It makes sense to use toml. It makes zero sense not to bring pytoml in the stdlib before doing so. The way this was handled is a little absurd.
Once TOML hits 1.0 I plan to work on getting a TOML parser into Python's stdlib.
(disclaimer: I am one of the co-authors of PEP 518 that apparently handled things in way that was "a little absurd" .)
From the link. Makes sense I think.