You are conflating RSA (the algorithm) with "ssh-rsa" (the option of the SSH suite indicating authentication with RSA in combination with SHA-1). They deprecate the latter.
Other options also based on RSA such as "rsa-sha2-256/512" are fine and will remain supported. In other words, the security problem is not with RSA per se.
Having said that, I have not checked whether the people you list have RSA keys bound to SHA-1...