New coronavirus can spread between humans, but started in a wildlife market
nationalgeographic.com
nationalgeographic.com
Was there some breach in containment security? Were experimented animals not disposed of properly? We don't know.
There might be nothing here, but it's a hell of a coincidence and if there's some broader security problem, it should be acknowledged and fixed.
Background on the lab: https://www.nature.com/news/inside-the-chinese-lab-poised-to...
https://www.washingtontimes.com/news/2020/jan/24/virus-hit-w...
So the question is what sort of controls are in place vs what sort of controls should be in place. It isn't Canada sending the samples, it's Canada not preventing them from being sent.
China studies major viruses too. They are a party to the research. That part isn't so insidious.
So it's either the actual death rates are higher (well, almost certainly), and/or they know or suspect something more serious.
Bearing in mind too, that even China doesn't trust China on reporting - witness the central committee order a few days ago to the regions to be accurate with reports or else.
Do we know that? All of the criticism I've seen has been of the government under-reacting. In fact, in a speech yesterday Xi told the local authorities that they weren't doing enough.
Non-Chinese estimates (as of 24 January) are that there's 6,000 people infected vs. 1,300 from the Chinese government.
The 6,000 figure comes from the Laboratory for the Modeling of Biological and Socio-technical Systems at Northeastern University in Boston: https://www.mobs-lab.org/2019ncov.html
Will the federal gov just trust the state gov, especially when the it's a republican president versus a democrat governor? Of course not. That kind of overly abstract wording is what lead to misunderstanding of actual problems.
The odds of the Chinese government making a super virus based on Coronavirus seem smaller than that, and the odds of it escaping the laboratory might be decent, but when you combine them, it's pretty slim.
If this were some super strain of Smallpox, that would make a more convincing conspiracy.
The odds of there being some plausible conspiracy by now are high.
I don't think anyone is arguing that this is an outbreak of an unusually dangerous virus. It's just an unexpected outbreak of a new flu-levels-of-dangerous virus, and it happened suspiciously close to a BSL-4 facility. A facility like that stores dangerous viruses and works on them, it's not at all implausible somebody fucked up and something escaped containment.
It's not unusually dangerous. Viruses kill lots and lots of people every year. This one doesn't seem to be more dangerous than any other. It's just new.
This facility is more likely placed because of opportunity for study in a high risk area. The consumption of random "sweet jungle meat" at the local markets likely has a legacy notoriety for such outbreaks.
I want to say that all government see the logic of this and haven't so much as attempted it. I don't think China would be this foolish.
Ultimately, people will be working on it no matter what, because bioweapons are to molecular biology as nuclear weapons are to nuclear physics. A crude and violent application of a field of knowledge of vital, cross-cutting importance to many areas of life.
Or is this a blacks op kind of thing so no one would admit to it publicly anyway, thus making it an unfalsifiable statement?
- There was a lot of bioweapons R&D done in the XX century[0]; it all seems to have been abandoned between the 70s and the 90s, but since the desire for it is not gone, it would be atypical for humanity if it really all ended;
- Biological sciences keep progressing; each year, developing bioweapons is easier than it was the year before, and since our control over biological systems grow, so (I believe) the allure of a controlled bioweapon.
- You have people like John Sotos - Intel's Chief Medical Officer and a colonel in the Air National Guard - delivering talks like [1], going all serious about the threat of future bioweapons. He seems to think that this is a real danger.
- My general tried and true heuristic that if something is within realms of technological feasibility and promises a clear economic or political benefit, it will be attempted, no matter how horrible it is.
--
[0] - https://en.wikipedia.org/wiki/Biological_warfare#List_of_BW_...
"No nation publicly acknowledges either an offensive biological weapons (BW) program or stockpile. Examination of unclassified sources indicates that several nations are considered, with varying degrees of certainty, to have some BW capability. These are: China, Cuba, Egypt, Iran, Israel, North Korea, Russia, Syria, and Taiwan."
The most data exists on the Soviet Union. Defectors from the soviet union had a lot to say about Biopreparat.[1] Not all of the rumors have been substantiated, but they did have a number of incidents that strongly suggest they had the souped up versions of several agents defectors claimed they did like anthrax[2], smallpox[3] and marburg[4]. In particular, the smallpox incident[3] that occurred had a high percentage of cases that progressed to the hemorrhagic form which indicates unusual virility in the strain.
There is also evidence of at least ongoing research on those agents. One researcher at vector died in 2004 from pricking herself with a needle filled with Ebola[5]. Whether that's offensive in nature is very difficult to determine. However there's definitely some transparency issues that have increased with time at this facility after a change in leadership in ~2004 or 2005.
[0] http://usiraq.procon.org/sourcefiles/CRS_2-20-08.pdf
[1] https://en.wikipedia.org/wiki/Biopreparat
[2] https://en.wikipedia.org/wiki/Sverdlovsk_anthrax_leak
[3] https://en.wikipedia.org/wiki/Aral_smallpox_incident
[4] Placeholder. Having a hard time finding where the info on Dr. Ustinov came from. This might be worth a read: https://weaponews.com/history/65348565-strain-u-the-tragedy-...
[5] https://www.nytimes.com/2004/05/25/world/russian-scientist-d...
Most subject matter experts seem pretty convinced this is happening.
https://www.nature.com/news/engineered-bat-virus-stirs-debat...
Two of the researchers are from Wuhan Biosafety Lab (Zhengli-Li Shi & Xing-Yi Ge).
https://www.zerohedge.com/geopolitical/did-china-steal-coron...
From the article:
"In March 2019 ... a shipment of exceptionally virulent viruses from Canada’s NML ended up in China. The event caused a major scandal with Bio-warfare experts questioning why Canada was sending lethal viruses to China. Scientists from NML said the highly lethal viruses were a potential bio-weapon.
Following investigation, the incident was traced to Chinese agents working at NML. Four months later in July 2019, a group of Chinese virologists were forcibly dispatched from the Canadian National Microbiology Laboratory (NML). The NML is Canada’s only level-4 facility and one of only a few in North America equipped to handle the world’s deadliest diseases, including Ebola, SARS, Coronavirus, etc."
"Bat cave solves mystery of deadly SARS virus — and suggests new outbreak could occur"
https://www.nature.com/articles/d41586-017-07766-9
(Wuhan lab apparently carried out the research)
The original paper is provided by virologists researchers and two of them are from Wuhan Biosafety Lab (Zhengli-Li Shi & Xing-Yi Ge)
An outbreak caused _by bats_, which is opposed to GP's theroy.
Read this website:
Specifically this one:
http://virological.org/t/ncovs-relationship-to-bat-coronavir...
and this one:
http://virological.org/t/missed-orfs-in-ncov/345
Basically
Wuhan virus is essentially SARs
http://virological.org/t/missed-orfs-in-ncov/345
"Anyone notice two ‘accessory’ ORFs not annotated in nCoV? Orf13 (aka 9b) (28284:28577) and Orf14 (28734:28955) . One is ~ 70% ID and other ~ 90% to syntenous ORFs in BAT SARS 2017 ?"
Translation:
Some very specific parts of the genome are matching almost exactly, which only occurs in almost identical viruses. The ORFs are tagged parts of genes, this researcher is discussing how Chinese researchers "omitted" parts of their gene annotation. Some back story is the gene sequences have been shared openly so they can be studied, Chinese messed with how they annotated the sequences.
To understand this better, here is the wikipedia definition of 'accessory gene' (ORF is just a chunk of the gene):
"The variable or accessory genome (also: flexible, dispensable genome) refers to genes not present in all strains of a species. These include genes present in two or more strains or even genes unique to a single strain only, for example, genes for strain specific adaptation such as antibiotic resistance."
The researcher is saying specific strain markers are matching between the 2017 virus and this one. Which is impossible, unless...
Not only that, its extremely similar to a SARs taken from bats in 2017! The comment on this linked thread is from a Harvard researcher, she is hinting at a biological link to a lab strain. This virus escaped from Wuhan lab
Another hint from another researcher
The comment on this page from Kristian G. Andersen is mildly disturbing (http://archive.is/O1vhN)... As Associate Professor, Scripps Research, Director of Infectious Disease Genomics, SRTI etc etc I assume he knows what he's talking about when he states: "That means that the outbreak was detected almost immediately after the first case, which - given that this is flu season in China - is just amazing. Detecting an outbreak of pneumonia (similar to flu) of a novel coronavirus that fast is truly impressive."
Basically they are saying its weird to have found this to be a novel virus so fast. Its so uncommon, how could they have done this? Its an oddity
Washington Times article
https://www.washingtontimes.com/news/2020/jan/24/virus-hit-w...
UPDATE
More evidence this virus came from a lab!!!!
Read through this Harvard biologists twitter:
https://twitter.com/AndyBiotech/status/1220377043210317831
Specifically:
"Even has almost identical accessory genes to 2018 bat ‘SARS’ (not all in new database annotations)"
Shes saying this virus has already been seen and is logged in a database!
Yes.
All of the initial cases are people who have been to a specific seafood market, which also sells wild animals.
You would be suggesting that somehow Biosafety Laboratory dropped it's virus specifically in that market, which sold animals known to naturally carry the coronavirus.
I call bs based on principal: Simple explanation is almost always right over complex ones.
The good news is that we are rational and able to find explanations based on evidence. Let's see what comes out in a few weeks.
https://www.scmp.com/news/china/society/article/3047646/no-l...
What's more likely?
An amazing coincidence:
- The origin of this novel disease is 20 miles from a research lab.
- The research lab is actively studying zoonotic viruses.
- The genome suggests a ~10 years lineage from the closest bat coronavirus (96% identical). This strain of Bat coronavirus has gone under the radar for that long?
- Despite the numerous mutations it has the exact same envelope protein to that closest bat coronavirus. This is extremely unusual even for closely related viruses.
- China is 'overreacting': has quarantined 50 million people, stationed armed guards in hazmat suits and is scrambling to build overflow hospitals.
ORSomeone responsible for disposing of test animals (bats) decided instead to make a quick buck selling them to a market 20 miles down the street?
Its DNA seems to have been sequenced and made available online. If it's anything that has obviously been tampered with by a lab, I expect someone to point that out sooner or later. That said, I have no idea what sort of thing could be detected in the first place.
https://www.chinasmack.com/shanghainese-netizen-finds-fake-c...
It's not inconceivable that a few of them ended up in the wildlife market. Great way for some low-level person in the lab to make a few bucks, and according to many people I know who have spent time in China the culture of "anything for a few bucks" is even more potent than it is in the USA.
I'm sure Chinese authorities are examining this possibility, but they would never talk about it as it would be embarrassing. If anyone is found to have done this they will be in deep 船尾.
So did the Wuhan BSL-4 lab virologists discover a new relative of the SARS virus, study it in their lab, didn't publish it, then accidentally set it free? Sounds substantially less likely to me than people coming in contact with it while handling bush meat. That happens all the time, unfortunately ...
But it's also a hundred times more likely that the source is nature. However we should not discount the possiblity that viruses get out by accident as it's not uncommon even with top bio safety labs.
Without human intention: yes.
Without repeated patterns of humans activity: no.
If meat agriculture, and meat-eating in general, were almost nonexistent, the risks of evolving a pandemic would be several orders-of-magnitude lower than exist today.
Bats have been the source of at least 4 pandemics. It's interesting to note that current coronavirus spreading in China and the SARS outbreak of 2003 have two things in common: Both are from the coronavirus family, and both were passed from animals to humans in a wet market.[2]
I tried to put together a page for coronavirus in China here where I tried to gather all the information in one place in order for us to easily follow stuff (https://thestrife.co/wuhan-coronavirus-media-coverage) and photos[3].
1. https://www.vice.com/en_us/article/xgqy3n/scientists-now-thi...
2. https://www.businessinsider.in/science/news/experts-think-th...
Another thing I’ve been pondering is since bats have been the source of deadly, infectious diseases in humans for so long, that’s where the historical myth of vampires and the living dead come from.
EDIT: My tone came off as completely dismissing your thinking, which I don't mean to, I just mean to say that there's already a lot written on the topic.
They don't mean another animal. They are hinting at the new Wuhan BSL-4 facility:
https://www.nature.com/news/inside-the-chinese-lab-poised-to...
It was already capable of making the species jump (else it wouldn't), and could have further adapted to using other transmission routes once it got into humans.
The long incubation time makes me think it takes awhile for the virus to get a foothold.
For coronavirus what we know so far is that it originated in a seafood market, but as to what species was eaten that is speculation at this point.
https://blast.ncbi.nlm.nih.gov/Blast.cgi?RID=2PUA1EJK114&CMD...
Bat SARS-like coronavirus WIV1 has been known since at least 2013.
https://en.wikipedia.org/wiki/Bat_SARS-like_coronavirus_WIV1
Felidae are cats, and Viverridae are civets (closer to hyenas and mongooses).
Despite all the media stating it as fact, it's not certain where it came from yet, just likely.
The National Geographic article states the following:
> "[T]he highest prevalence of coronaviruses tend to be extruded by animals through feces, or guano in the case of bats. Coronaviruses not only spread via the air and the respiratory tract, but also if fecal matter comes in contact with another creature’s mouth. Bats aren’t exactly clean, so if one nibbles on a fruit, the food may get contaminated with fecal matter. If the fruit drops to the ground, then it can serve as a viral crossover point for farmed animals like civets." [2]
It seems more likely the virus jumped from the bat to another animal that ate something contaminated with bat guano infected with the virus. That animal was then traded at this market where the virus somehow spread to humans.
This lead me to find the following Wikipedia article on Civets[3]. This mentions how Civets are farmed and fed coffee cherries then the partly digested coffee beans are harvested from the Civets fecal matter. This is purely speculation, but this could be one way that the virus could have spread to humans. A Civet ate a coffee cherry that an infected horseshoe bat had contaminated with guano infected with the virus. The Civet was traded at this market and the virus spread to humans. Once again, this is pure speculation on my part but it shows how there are other mechanisms in which the virus could spread to humans without someone 'eating bats'.
[1] https://www.vice.com/en_us/article/xgqy3n/scientists-now-thi...
[2] https://www.nationalgeographic.com/science/2020/01/new-coron...
Because the specific claim was "most probably bats being eaten[1]" (not found in citation). The commenter above took an article which claims that the virus is linked to those found in bats, to "most probably" being caused by bats being eaten.
That is the speculation/claim that is under dispute.
It absolutely is. You don't have any evidence for this, just speculation. Is it plausible? Sure. Is it "most probably" (as the commenter above suggested, linking to a source)? No, there's no evidence cited that the disease was spread by eating bats in the article.
So yes, it is inaccurate to make a claim, and then cite a source which doesn't make that claim, without making it clear that you're just speculating, and have no actual information to add.
And this has what to do about making specific claims without evidence? With passing off sources as supporting your claims when they make no such claim?
> From what I've read it came from bats. Most probably bats being eaten.[1]
This claim is not found in
> 1. https://www.vice.com/en_us/article/xgqy3n/scientists-now-thi...
Simple as that.
Several media outlets have confirmed that the "seafood market" actually sells a wide variety of wildlife meat
And a reference pic in Chinese here On this board, it says "Wildfowl Market". They put a price on some meats, including Masked palm civet, which suspected to be the intermediate host of the disease.
https://www.6parknews.com/newspark/view.php?app=news&act=vie...
I'm sorry, but as I've said numerous times, the specific claim that I was disputing was that the commenter above claimed that they had an article stating that bat consumption was the "most probable". In fact, the article you linked specifically says what I'm saying. Namely, don't speculate!
> The West Blames the Wuhan Coronavirus on China’s Love of Eating Wild Animals. The Truth Is More Complex
Wonder what this could mean?
> The 2002-2003 SARS pandemic was eventually traced to civet cats sold in a similar style of wet market in southern Guandong province, and some foreign tabloids are circulating unsubstantiated claims that the Wuhan coronavirus originated from everything from bat soup to eating rats and live wolf pups.
This certainly doesn't sound like Time magazine is speculating that bat consumption is the "most probable" cause to me.
> However, Adam Kamradt-Scott, associate professor specializing in global health security at the University of Sydney, says this way of thinking is often flawed. While scientists first thought that Ebola started with the consumption of bat meat in a village of south-eastern Guinea, they now believe that the two-year-old girl known as Child Zero was likely infected via bat droppings that contaminated an object she put in her mouth. MERS was also primarily spread from live camels to humans through association, rather than the eating of camel meat.
This, rather, seems to support my claim that we shouldn't speculate on things that we don't have any information or expertise about.
[1] https://www.zerohedge.com/health/chinese-government-forces-t...
Starting from the title. The “TV show” the article refers to was actually just an internet video post. Additionally, this was a one-off event from 2016, and it caused outrage and she was forced to publicly apologize[1]. In many places, the Zerohedge author implies it is a current event, stating:
> The video shows the woman breaking apart the corpse of a boiled bat, dipping its wing in sauce and eating it.
> Meanwhile, the scale of the coronavirus outbreak continues to escalate.
This is clearly misleading. Additionally, the description of the bat’s “corpse” is reminiscent of PETA writing about meat farms. I suspect this writing style only appears when the author is projecting a bias.
Next, the first photo featuring a girl holding a bat has a Chinese caption. Below this Chinese caption is an English caption, somewhat loosely implying a translation. This English caption mentions eating bats as a commonplace event in China. Not only is this fact itself debatable, but it does not translate any part of the Chinese caption, which roughly says “As the Coronavirus news spreads, the news about bats containing lots of viruses is once again garnering attention.”
Next, there is a lengthy Chinese tweet quoted. The English of the article does not reference the content of this tweet a single time, instead appearing to imply that it supports whatever claims he is making and assuming the reader will not understand the tweet. The tweet itself says that, loosely, research has found that bats could be the source of the coronavirus and this older bat eating video is once again making the social media rounds, prompting another public apology from the woman in the video. The article says, directly preceding the quote: > The woman featured in the clip took to social media to profusely apologize for her role in encouraging the consumption of bats and encouraged everyone to start washing their hands more.
Indeed tangential, but not related.
Essentially every claim in the article is unsourced and largely unsubstantiated, and it paints the Chinese in a very negative light, with many heavily prejudiced and vulgar portrayals of China and Chinese food. So, in this case, yes this article is invalid.
On top of all of this, you took the invalid claim that a tv show featured a bat being eaten and turned it into “bats are eaten on tv, commonly”. This is disingenuous on your part, on top of an already disingenuous source.
[1] remember when Ozzy ate a bat’s head on stage?
However, I would think it fairly uncontroversial, and readily provable, that bat meat is indeed eaten in China [1]- which is the claim that I was making earlier. Personally, I wouldn't claim at this point in time that the virus originated from bats or other animals - although it is certainly possible.
[1] https://www.google.com/search?q=bat+soup+delicacy+china&sour...
> It absolutely is. You don't have any evidence for this, just speculation. Is it plausible? Sure. Is it "most probably" (as the commenter above suggested, linking to a source)? No, there's no evidence cited that the disease was spread by eating bats in the article.
You replied
> It's been reported that there are tv shows in China where bats are eaten [1] Not a great source but it links to official China Gov sources.
But later stated
> However, I would think it fairly uncontroversial, and readily provable, that bat meat is indeed eaten in China [1]- which is the claim that I was making earlier.
Effectively, what you've said then was entirely a non-sequitur to what I was discussing, which was the specific claim about whether or not there is enough evidence (presented here, anyway) to claim that bat consumption is the "most probable" cause of the disease, or even if consumption at all will be linked to the disease (rather than proximity/hygiene).
In fact, you later stated that you agree with my point.
> Personally, I wouldn't claim at this point in time that the virus originated from bats or other animals - although it is certainly possible.
I don't understand why my girlfriend likes to eat various kinds of insects and larva and why people in my village like to eat a pigs' brains. Yesterday my girlfriend showed me a YouTube movie of a Chinese girl eating a live octopus. I also know some people like to eat snakes around here.
Different strokes for different folks and all that.
Nonsense, that's Austrian exceptionalism at its worst. All across Europe the dish (English speaking locales: "calf's lights") can be had in a minority of restaurants and also is occasionally cooked at home.
Clothes and such can be had very cheap as well (maybe 200 Baht for jeans), but no brands of course.
For reference: 1 USD is around 30 Baht right now.
Rent for a studio outside the city centers of Bangkok with AC and a hot shower (rare since locals don't like hot showers) is like 4000-8000฿ / mo.
The only creatures I'd ever consider eating alive are insects. I've stopped eating squid altogether.
[1] https://www.ncbi.nlm.nih.gov/protein/YP_009724392.1
With regard to ZC45, which your paper discusses, it states:
> The genome of our virus strains are phylogenetically closest to the bat SARS-related coronaviruses first found in the Chinese horseshoe bats, Rhinolophus sinicus, captured in Zhoushan, Zhejiang province, China, between 2015 and 2017. The full virus genome had about an 89% nucleotide identity with bat-SL-CoVZC45, which makes it a new species. Moreover, the Spike protein of our virus has an 84% nucleotide identity with the bat-SL-CoVZC45 coronavirus and an 78% nucleotide identity with the human SARS coronavirus.
Doesn't answer your question as to how common this is, but provides some additional context on the extent of similarities.
https://blast.ncbi.nlm.nih.gov/Blast.cgi?RID=2PUA1EJK114&CMD...
Bat SARS-like coronavirus WIV1 has been known since at least 2013.
https://en.wikipedia.org/wiki/Bat_SARS-like_coronavirus_WIV1
> “If we were to shut the wildlife markets, a lot of these outbreaks would be a thing of the past,” says Ian Lipkin, director of Columbia University’s Center for Infection and Immunity, whose lab worked with Chinese officials to develop early diagnostic tests for SARS.
> That’s because both SARS and the new outbreak are zoonotic, meaning these diseases started in animals before spreading to humans. Zoonotic diseases rank among the world’s most infamous. HIV, Ebola, and H5N1 influenza, for example, all percolated in wildlife before close interactions with humans spawned international outbreaks. With SARS, food preparers and people who handled, killed, and sold wild animals made up nearly 40 percent of the first cases. The earliest episodes were also among people who were more likely to live within walking distance of wildlife markets.
Also, the distance from the Wuhan wildlife market to the high-speed rail station is walking distance.
- Not really an expert, might be wrong.
Edit: typos
30 years ago yes, but not anymore.
https://data.worldbank.org/indicator/SI.POV.DDAY?locations=C...
I've never been to Beijing but I have visited two of the other tier one cities and I can assure you wet markets still exist there.
I gather the one in Wuhan wasn't supposed to either, but either enforcement was lacking or they were paid to look the other way.
https://www.npr.org/2020/01/22/798644707/why-wet-markets-per...
One interesting point was they had tried to discourage these markets in the past and replace them with supermarkets, but people didn't want to switch. These markets offered food cheaper, people like them, they might offer opportunities to socialize, and they offer wild animals which are traditionally viewed as healthy and a sign of wealth.
Of course, the Chinese government can do a more authoritarian crackdown on it than what they tried in the past. Also, maybe this outbreak could change public opinion.
They have quarantined whole cities and are building a hospital at war scale especially for this.
Maybe the Chinese know something that the world doesn't know yet.
The lockdown is unprecedented in China but the Soviet Union used to do similar lockdowns (at a smaller scale) during cholera outbreaks. I think this is just a massive overcorrection due to China's 2003 SARS outbreak but we'll start seeing more and more of these large scale quarantines as our civilization comes to terms with the realities of cheap air travel.
[] https://www.reddit.com/r/europe/comments/6nhzqd/54_years_ago...
[1]https://en.wikipedia.org/wiki/1972_Yugoslav_smallpox_outbrea...
https://en.wikipedia.org/wiki/1978_smallpox_outbreak_in_the_...
In the end none of the above matters at all. What matters is the willingness globally to take political and economic action to contain transmission. The World Health Organization's failure to declare this a global emergency is risky if the characteristics stated above turn out to be accurate. Timing is key.
The common cold already is. You rub your eyes, the virus enters your tears, which drain to your nose.
It reminds me how much of the "panic!" signal I've been really starting to see explode in the last ~24h, which humans are highly sympathetically attuned to when they suddenly see it spreading everywhere around them, is just from a sheer mass of other idiots who actually don't know anything either coming online on the issue, and reflects internet meme virality, and only very indirectly the uptick in actual danger (ie, from having been loosely following the outbreak, prior to this latest popularization).
Still looks pretty fucking bad, though.
If you're using a face mask, you should be washing your hands anyway, because if you think it's working, the moment you touch it you've come in contact with virus.
Hard to do, I know, but it eliminates a major source of transmission.
They aren't spending time confirming that dead patients had coronavirus when they are in crisis mode.
It matters critically if China, or anyone else, is in any way lying about anything.
Official reports are 2K infected, if it's actually 100K and they are not telling the WHO, it's really, really bad.
What the 'put on the news' is another matter and gray area concerning information control in crisis times (i.e. trying to stop mass panic). But with the WHO and other governments, it's another story.
It's not like they can entirely hide these things, I really wonder what kind of other 'interested parties' are making their own clandestine measurements.
So, not a pandemic in terms of fatality. General sense so far seems to be it's more of a big deal than the (run-of-the-mill) flu, less of a big deal than SARS. (Keep in mind that the run-of-the-mill flu is kind of a big deal.)
6 of the first 41 identified patients have died. That's a mortality rate of 15%. https://www.thelancet.com/journals/lancet/article/PIIS0140-6... Caveat: 41 is a very small sample, and the first patients are likely to have been the most severe cases (pre-existing conditions, weak immune systems, etc).
And when you take publicly reported statistics, 42 deaths out of 1441 confirmed cases, that's a mortality rate of 2.9%. But the confirmed cases are probably under-reported (but so are deaths)...
15% or 2.9% are 150-30 times worse than the flu mortality rate.
The latest stats: 54 deaths out of 1764 cases → 3.1% mortality rate https://bnonews.com/index.php/2020/01/the-latest-coronavirus...
What we need is stats on cured vs died for confirmed cases, but I haven't seen recent figures on that for a while, plus there's an inevitable delay on declaring somebody cured.
I don't think so, because deaths lag infections. When the outbreak is rapidly growing, if it takes about 5 days for the virus to kill, then even if you knew all the stats perfectly, you actually need to look at the ratio of "deaths as of day D" over "infections as of D-5" to calculate the mortality rate. If you do this math right now (291 infections as of Jan 20, 56 deaths as of Jan 25) you find the mortality rate is 19%. Assuming infections are underreported by a factor of 5, the mortality rate is still high at 19/5 = 3.8%.
https://gisanddata.maps.arcgis.com/apps/opsdashboard/index.h...
I keep seeing this 2.5% number, and I don't understand what people are talking about.
But even if it's not 100% effective, even if it's just 90% it's still a massive win.
One of many studies: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4868605/
Never touch the front of the mask. Wash your hands after removing. Dispose of mask after use.
- An acquantince of mine went to a supermarket today. Everything seems fine (they live not too far from Beijing where there are confirmed cases).
- There are still people entering Wuhan to see family. (https://youtu.be/cmgPVhubmQA?t=208)
I'm not saying people don't care. My family is worried for me because I left Hanoi the same day an infected individual arrived in Hanoi. I have friends that are worried for their families back home. But I still see a lot of friends celebrating the new year, albeit not in any quarantined areas.
There's reports of people leaving the quarantined areas with symptoms. I wish they would team up with Tencent to flag individuals who have been active in the quarantined regions and left such regions since then.
What would it look like if it wasn't fine...?
People are taking it very seriously.
- Summer/spring (lower pollution — Chinese AQI around 60–100, with spikes to 150): 5-10% of people wear masks outdoors. The indoor rate is lower (2-3%?).
- December/early January (AQI typically above 120): 20-30% outdoors. The indoor rate is much lower.
- As of January 23/24: 80-90% outdoors. The indoor rate is at least as high. This time period includes a couple of anomalously low-pollution days (AQI 30 — the lowest I've ever seen in Shanghai), when I might otherwise expect mask usage to be even lower than that 20–30% from before the Wuhan events escalated.
This is just people walking around and shopping. As of a few days ago, some businesses, such as Starbucks and Didi (Chinese Uber/Lyft), require employees to wear respirators (and they've messaged to customers on WeChat and in the Chinese Starbucks and Didi apps).
We’ve decided to leave China before things get any worse. I’m not looking forward to bringing my family through the airport this week though...
While making it, I was watching the numbers quite closely. An observation I made is that the official statistics were ~900 officially confirmed cases on the 24th evening, ~1200 officially confirmed cases 25th (morning), yet only 1300 officially confirmed cases on the 25th (evening). Why ~50% jump then nothing? All previous figures had followed this hyperbolic path.
A few possible reasons (conjecture): overwhelmed doctors, possible low level bureaucratic pressures not to report or admit new cases, people dying at home, undiagnosed infections, geographic spread and Chinese New Year resulting in slower diagnosis.
All we can really take from this is that clearly the official statistics are only part of the story. In terms of the speed of the domestic geographic spread, it is horrifying. The cat is truly out of the bag.
This is a comparison between 'bat SARS-like coronavirus' and 'Wuhan seafood market pneumonia virus'. Under Alignments, it looks like the envelope proteins are identical. Wouldn't that be unlikely for a natural mutation? Would this not lead credence to this being a leak from their BSL-4 lab about twenty miles away from the Wuhan seafood market?
Thanks!
https://ncbiinsights.ncbi.nlm.nih.gov/2020/01/13/novel-coron...
Another MAJOR key difference here: One is not transmissible to humans and the other is.
Actually that’s not true either, you can catch pneumonia from breathing the wrong chemicals. Pneumonia is an inflammation of the lungs, which is frequently caused by infection.
Here it is:
Wuhan virus is essentially SARs http://virological.org/t/missed-orfs-in-ncov/345 "Anyone notice two ‘accessory’ ORFs not annotated in nCoV? Orf13 (aka 9b) (28284:28577) and Orf14 (28734:28955) . One is ~ 70% ID and other ~ 90% to syntenous ORFs in BAT SARS 2017 ?"
This was a lab break.
Or, the lab happened to be studying a similar virus that existed in local bats?
As you can see, they are highly related (88.7% identity), but there are point mutations all over the place. The envelope protein is very short, and given this rate of mutations it is not unlikely to find an identical stretch of this length, particularly if the coding sequence is under selective pressure. In fact, the nucleotide sequences for the envelope protein differ in 3 silent point mutations (you can go to alignment view, the sequence starts with "ATGATGAACCGAC" and ends with "TGGTCTAA", total length is 228 nucleotides.)
So no, this is not evidence of this being artificially generated, just that they're highly related.
Edit: To put this in perspective, the original SARS virus from 2003 is 84.9% identical to the "bat SARS-like coronavirus" (https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=2T5DXWU...) and 82.3% identical to the Wuhan seafood market virus (https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=2T5GRS8...).
This link is no longer working ("Error: Results for RID 2PUA1EJK114 not found", at least for me), mirror: http://archive.md/zyYYY
https://gisanddata.maps.arcgis.com/apps/opsdashboard/index.h...
I just can’t believe the real number of infected is as low as the reported confirmed number based on that map. It’s got to be all of over China if the confirmed cases are all over like that (not to mention it made to NA and Europe).
- MERS-CoV: bats via dromedary camels
- nCoV-2019: bats or snakes?
- Influenza: pigs, birds
- E. coli O157:H7: cows and other farm animals.
...
(Edit: I mean along the lines of how safer sex is encouraged to prevent STDs, hand washing is encouraged to prevent food-borne illnesses, ... I haven't seen a call for the above.)
You also have to wonder if the African Swine flu running rampant through China is also part of the cause.
You mean as in it having transformed and evolved from the swine flu?
If pigs can be incubators of human and non-human viruses and ASF being rampant did it and whatever bat virus or seafood virus get together in a pig and create 2019-nCoV.
E. Coli is also scary, but it doesn't spread as readily person to person, so it's not something that's going to move the needle for most people.
Viruses that are routinely deadly to the organisms catching them are not adapted well to their hosts. We see this with HIV (came from monkeys), the worse flus (came from birds), and all sorts of other stuff.
(besides: kindness to animals, lower climate impact, solve food scarcity, human health)
It’s possibly a combination of the infected urine, feces, and blood from infected animals. And it mutated into something that transmitted to humans.
And it doesn’t even have to be a wild animal. The wild animal could’ve just been the carrier, and was immune to the actual virus.
And it was your house pet that got sick from it, and had infected bodily fluids. And then when you clean up your pet, your infected hands touched your mouth or eyes, and you got sick. Then you might’ve transmitted it to someone else with a weaker immune system, and they got sick, and so forth, and now we have a full blown pandemic.
So it could have been a wild animal that transmitted their infected feces to your house pet, or to a stray dog or cat. And dogs urinate on every tree, and other dogs like sniffing and licking that urine. Then your dog licks you or your kids. Gross.
Maybe it’s time I became a vegetarian. Although you can still get E. coli poisoning from unsafe industrial food processing.
But that sweet meat and bbq sauce.. delicious.. I.. can’t.. resist..
its also the industrial scale and treatment of animals that anger vegans the most.
• human-to-human transmission while asymptomatic, truly the killer feature [1]
• 15% mortality rate in first patients (6 of 41 are dead) [2]
• cases/deaths doubling every 2 days [public data]
• epidemiologist predicts 100x more infections in 10 days [3]
Caveats:• mortality rate sample is small (41) and the first patients are likely to be the most severe cases (pre-existing conditions, weak immune systems, etc); so the true rate could be less.
• public reports of cases/deaths could be increasing slower than reported because Chinese authorities could be trying to be more truthful (IOW reported numbers are finally catching up w/reality); or alternatively public reports could be lagging reality because authorities could be increasingly hiding the facts or simply be less and less able to report and monitor as Wuhan is turning into a bigger unmanageable chaos every passing day
• availability of medicine may limit the outbreak. The pulmonologist who discovered the SARS coronavirus says they have several medicines ready: https://twitter.com/hhh05146721/status/1220953373622534145
[1] https://thelancet.com/journals/lancet/article/PIIS0140-6736(...
[2] https://thelancet.com/journals/lancet/article/PIIS0140-6736(...
[3] https://medrxiv.org/content/10.1101/2020.01.23.20018549v1
This early report I believe is why the leaks (ie Romania and Brazil) from the bio facilities are stating such high numbers.
That's the official number they had, so what they thought was true, that's what people are leaking.
Data now seems it's maybe 3%. Unless there's something that confirms that early number.
China might be able to cover up numbers having it. Covering up dead bodies is very hard. We have Webo and it would have leaked by now.
This is not to say everyone should panic as the strict containment policy that China and the Chinese adopted should help reduce the R0 significantly. However, the asymptomatic period is long, thus it remains to be seen what the full impact of this virus will be.
Other countries may need a better policy to track high-risk individuals already in their territories.
“Neil_ferguson @neil_ferguson
R0 estimates for flu pandemics lie in the 1.5-2.5 range. Yes, Measles is much higher (10-15). An epidemic with an R0 of 2.5 could still infect between 60% and 90% of the population, depending on contact patterns and assuming no prior immunity. Not all might be symptomatic though.”
https://mobile.twitter.com/neil_ferguson/with_replies
[1] https://en.m.wikipedia.org/wiki/Basic_reproduction_number
[2] https://www.newscientist.com/article/2231333-what-are-the-sy...
What strict containment policy?
What more can you do?
https://qz.com/1790891/china-expands-quarantine-to-12-cities...
https://www.nytimes.com/2020/01/25/world/asia/china-coronavi...
https://www.reddit.com/r/videos/comments/et981n/this_is_how_...
Also, still in the US people eat animals like squirrels, raccoons or feral pork.
That being said, viruses were not transmitted by people eating bats. It was a species of cats that got infected by bats. As for cat consumption, well it is very easy to dupe somebody to eat cat meat thinking it is rabbit. That is why in a lot of developing countries when you buy rabbit meat they keep the furry head of the animal attached to the body on the bag so that you can see it is the real thing.
In Australia, they also pride themselves on eating kangaroo meat. Can you imagine people eating a little baby Joey kangaroo?
But nobody bats an eye at this, or claim the Australians are backwards for propagating such a practice.
~ An Epidemiologist Who Really Hates This Bit of Othering That Always Shows Up In Outbreaks
https://datastudio.google.com/u/0/reporting/e693c1f9-13fa-42...
And for Twitter that is #2019nCoV.
Using the correct name (or including it in parenthesis somewhere) is a way to help your publications stay connected to the wider discussion.
https://www.medrxiv.org/content/10.1101/2020.01.23.20018549v...
https://twitter.com/DrEricDing/status/1221134886825873409/ph...
1) Neil Ferguson knows his business, but part of that is knowing that, like economists predicting recessions, there's little penalty for being wrong.
I'm sure you can find a quote that's similar from him for any recent outbreak. Why? Because of course we need to plan for that possibility. It's a low risk statement to make.
2) R0 is not a biological constant. It's a combination of contact rates and probabilities of transmission. Neither one of those is actually fixed.
https://mobile.twitter.com/ferrisjabr/status/122096355391127...
> Neil Ferguson knows his business, but part of that is knowing that, like economists predicting recessions, there's little penalty for being wrong
No. Do you think Nate wasn't penalised for his take on the 2016 US election?
As for Nate Silver, I'd suggest there are some very different circumstances there than academic and policy forecasting.
I now open packages outside of the house and spray the contents down with alkohol.
Yea keep those sneaky vectors in mind.
As regards to the source we really hoped it is not from the lab in Wu han, one of the few la e in the world with category 4 lab handling sars etc.
It also theorized that the source of the SARS virus might have originated from an infected cat. And Ebola may have originated from infected bat feces, that might have landed on a girl’s toy, which she then put into her mouth. And the MERS virus in the Middle East may have come from an infected camel.
This appears to be a logical and scientific deduction.
So for this Coronavirus, it appears to follow the same pattern. Infected animal feces mutated into some virus, that made the transmission to humans.
My theory, is that perhaps an infected animal’s feces, may have mixed with other fluids, like blood, from freshly slaughtered animals, and mutated into something that infected a human with a weakened immune system (easy target), who then transmitted it to other healthy humans by contact.
On one hand, it does seem that the best way to guarantee that you’re sourcing your meat from a fresh and healthy animal, is to pick the animal that you want, and to slaughter it on the spot. This means that the meat vendor does not have to maintain a refrigeration system, and you don’t introduce other chemicals or salts to preserve your meat.
But the problem is that you have to keep the animals in captivity, and the meat vendor must handle, and clean all their urine and feces. And when animals get sick, their feces and urine gets infected, thus you increase the probability of an outbreak like this.
What’s the solution? Maybe China must begin eliminating wet markets, and eliminate the practice of keeping live animals in captivity, in order to minimize the incubation, mutation, and the transmission of such viruses. And instead, to begin using a refrigeration system, to preserve slaughtered animals.
[1] https://time.com/5770904/wuhan-coronavirus-wild-animals/
https://blast.ncbi.nlm.nih.gov/Blast.cgi?RID=2PUA1EJK114&CMD...
Bat SARS-like coronavirus WIV1 has been known since at least 2013.
https://en.wikipedia.org/wiki/Bat_SARS-like_coronavirus_WIV1
In 2019, CBC reported "Canadian government scientist under investigation trained staff at Level 4 lab in China"
> A Canadian government scientist at the National Microbiology Lab in Winnipeg made at least five trips to China in 2017-18, including one to train scientists and technicians at China's newly certified Level 4 lab, which does research with the most deadly pathogens, according to travel documents obtained by CBC News.
> Xiangguo Qiu — who was escorted out of the Winnipeg lab in July amid an RCMP investigation into what's being described by Public Health Agency of Canada as a possible "policy breach" — was invited to go to the Wuhan National Biosafety Laboratory of the Chinese Academy of Sciences twice a year for two years, for up to two weeks each time.
https://www.cbc.ca/news/canada/manitoba/national-microbiolog...
> Canadian lab's shipment of Ebola, Henipah viruses to China raises questions. Shipment may be part of RCMP investigation into researchers evicted from National Microbiology Lab. Scientists at the National Microbiology Lab sent live Ebola and Henipah viruses to Beijing on an Air Canada flight March 31, and while the Public Health Agency of Canada says all federal policies were followed, there are questions about whether that shipment is part of an ongoing RCMP investigation. Ebola and Henipah are Level 4 pathogens, meaning they're some of the deadliest viruses in the world. They must be contained in a lab with the highest level of biosafety control, such as the one in Winnipeg.
https://www.cbc.ca/news/canada/manitoba/ebola-henipah-china-...
"Wuhan" is the center of this outbreak too. It's too much of a coincidence.
https://www.washingtontimes.com/news/2020/jan/24/virus-hit-w...
> Mr. Shoham, now with the Begin-Sadat Center for Strategic Studies at Bar Ilan University in Israel, said the virology institute is the only declared site in China known as P4 for Pathogen Level 4, a status indicating it uses the strictest safety standards to prevent the spread of the most dangerous and exotic microbes being studied.
> The former Israeli military intelligence doctor also said suspicions were raised about the Wuhan Institute of Virology when a group of Chinese virologists working in Canada improperly sent samples to China of what he said were some of the deadliest viruses on earth, including the Ebola virus. In a July article in the journal Institute for Defence Studies and Analyses, Mr. Shoham said the Wuhan institute was one of four Chinese laboratories engaged in some aspects of the biological weapons development. He identified the secure Wuhan National Biosafety Laboratory at the institute as engaged in research on the Ebola, Nipah, and Crimean-Congo hemorrhagic fever viruses. The Wuhan virology institute is under the Chinese Academy of Sciences. But certain laboratories within it “have linkage with the PLA or BW-related elements within the Chinese defense establishment,” he said. In 1993, China declared a second facility, the Wuhan Institute of Biological Products, as one of eight biological warfare research facilities covered by the Biological Weapons Convention (BWC) which China joined in 1985.
https://www.dailymail.co.uk/health/article-7922379/Chinas-la...
> China built a lab to study SARS and Ebola in Wuhan - and US biosafety experts warned in 2017 that a virus could 'escape' the facility that's become key in fighting the outbreak
> The Wuhan National Biosafety Laboratory is the only lab in China designated for studying dangerous pathogens like SARS and Ebola
> Ahead of its January 2018 opening, biosafety experts and scientists from the US expressed concerns that a virus could escape the lab
> In 2004, a SARS virus 'leaked' from a lab in Beijing
> Experts say the coronavirus that's infected more than 800 people mutated in animals and became capable of infecting humans at the Wuhan seafood market
> But a 2017 article warned of the unpredictability of lab animals that scientists at the Wuhan lab intended to inject with viruses
SARS and MERS, highly similar viruses which emerged over the last 20 years, have a very similar emergence pattern to the new nCoV virus. Wuhan has a seafood market which has been known to house animals other than seafood. Initial cases were from those seafood markets. There’s quite literally no evidence to suggest that the Wuhan lab had anything to do with this outbreak.
The Wuhan National Biosafety Laboratory is the only lab in China designated for studying dangerous pathogens like SARS and Ebola. What are the chances of coincidence that Wuhan is also the center of this current outbreak?
Maybe one of the lab animals somehow leaked and ended up in the food market.
Seriously, can people take a chill pill and stop spreading fud?
I read https://promedmail.org and I'm waiting for them to panic before I invoke contagion metaphors. It's way too early to state the infection and mortality rates
At the grocery stores at which I buy most of my food I use the self checkout, so no interacting with humans there.
At McDonalds I order and pay at the kiosks, so no human interaction there except when they hand me the bag with my food. At Burger King and Wendy's I do order at the counter, so I am talking to another human who is maybe a meter or so in front of me.
Every three months I have to pick up prescription re-fills so deal with a human at the pharmacy, and perhaps stand in line there with other humans.
I live in a house in a low density neighborhood, with no other house nearer than 40 meters, although my neighbors on one side have an RV in their front yard that is only about 15 meters from me, with an older couple (their parents presumably) living in it. No human interaction here other than occasionally waving at someone walking their dog on the street in front of my house (about 20 meters away).
Yet I still get the occasional cold-like or flu-like illness in the winter. Who is passing on these viruses to me?
These may not be that much better - https://www.cnbc.com/2018/11/29/mcdonalds-touchscreen-kiosks...
So when we switched to work at home, and so I was no longer in daily contact with people with school children (a big factor in spreading viruses), I hoped maybe it would mean much fewer colds and such.
Do you think that is a less likely vector of disease propagation, compared to interacting with one cashier?
Are you concerned that the cashier's hands touched your groceries during the scanning process?
If so, whose hands do you think put those groceries on store shelves?