Imho, indigo and violet are the same thing (at least very close), and cyan is missing, so red, orange, yellow, green, cyan, blue, violet would have made more sense
But of course it's indeed quite possible the language shifted and it made sense in Newton's time
I'm not a native English speaker though, and as far as I know neither cyan nor indigo are commonly used in standard everyday language, but more in their own niches (printing, clothing, ...)
The wiki article gives the following etymology:
> The word chromatic comes from the Greek chroma, color; and the traditional function of the chromatic scale is to color or embellish the tones of the major and minor scales.
But this feels a bit weak to me. Would be nice to have a more authoritative source.