The pop-ups seem to come up in the same place and if one comes up before another, which is a problem caused by having the pop-ups come up when you go anywhere near the grey bar, it becomes difficult to know which pop-up is for which link. Personally, I would have the user hover over the blue link, then have the grey background box come up as a sort of guide for the eye to follow towards the pop-up, and have the pop-up surrounded with the grey background box as well (at the minute it has no background 'frame'). This way you guide the user from the link to the pop-up and they know exactly which pop-up relates to the link.
Also, I would reduce the size of the tag cloud. I just searched for Adobe AIR and the cloud was huge. Perhaps have the top/most occuring tags and the ability to expand the cloud if you want to.