Hence, I suppose that in the starting statement of "If you have two flat paper shapes and a pair of scissors, can you cut up one shape and rearrange it as the other?", the concept "flat paper shapes" refers to polytopes [1]. That is, N-dimensional generalizations of polygons.
Otherwise the statement "For two-dimensional shapes, the answer is easy: Just determine their areas. If they’re the same, the shapes are scissors congruent." is wrong with the circle - square case as a counter example.