Some of these links go directly to the retracted paper, some go to the retraction notice (where available), and some go to reports of software bugs which impacted others' results but didn't cause any retractions. This list is of course incomplete, but here are a few, mostly pulled from Retraction Watch:

https://dx.doi.org/10.1038/nbt0308-274

https://dx.doi.org/10.1371/journal.pone.0038234

https://dx.doi.org/10.1371/journal.pcbi.0030158

https://dx.doi.org/10.1126/science.314.5807.1875b

https://dx.doi.org/10.1186/1471-2105-5-80

https://dx.doi.org/10.1038/nm0610-618a

https://dx.doi.org/10.1093/bioinformatics/btx811

https://dx.doi.org/10.1200/jco.2015.62.0294

https://dx.doi.org/10.1038/s41562-018-0507-0

https://dx.doi.org/10.1177/0022146515595817

https://dx.doi.org/10.1021/acs.orglett.9b03216

https://dx.doi.org/10.1073/pnas.1602413113

https://dx.doi.org/10.1093/cje/bet075

https://dx.doi.org/10.1001/jama.2019.11954

https://dx.doi.org/10.1126/science.314.5807.1856