If I were you, I'd be sure to have tested, killer cookie recipes, then consider...
-Integrating online ordering system for in-store pickup or shipping
-Cater to fans of vegan baked goods (definitely a burgeoning market segment)
-Work with moms and Susie Homemaker types to determine favorite cookie recipes or trends
-Perhaps use the store as a distribution channel for home-based bakers. I know a lot of people who think they bake "the best" cookies. There's a lot of different directions to take this; profit sharing, recipe licensing, etc.
-Develop an "open source cookie", modified by customer suggestions and input
-Keep a basic product line of old standby cookies (chocolate chip, oatmeal raisin, etc.) and have a secondary product line that's shuffled or changed very frequently (at least once a month)
-Publish an annual book of recipes
-Children influence how their parents spend money. Offer a free cookie on a child's birthday and seek distribution in local schools.
Just my thoughts...not sure if any of them align with what you had in mind. I think this is a very cool idea and could definitely succeed if executed correctly. Good luck!