1) How to fabricate to those tolerances reliably? (Robots come to mind).
2) How easy is it to operate these shafts in a degraded capacity if there is physical damage to the vessel during operations?
The first issue probably should be solved by improving automated construction tech. The second issue... these things need to operate well under worst case load scenarios, not just right out of the dry-dock... and it sounds like they can't even get the ideal scenario working.