Suppose a village has a birth rate of 8 babies a year (2 babies every 3 months). There's (roughly) a 50% chance the babies will be male and female, 25% chance that they're both female and 25% chance that they're both male.
That means that if you're sampling from a district that has 1,000 villages (with the average birth rate of 2 babies / 3 months, roughly the birth rate indicated by the article), one quarter of the villages will have 2 male babies - that's 250 villages with 0 female babies born in the last 3 months.
Not making any claims regarding foeticide in India - just saying that the way they chose the villages matters a lot.