- It's meant to be a stealthy plane, how about tweaking the board to cause a nice and noisy signal leak in certain circumstances?
- find a way of causing the board to fail under suitable circumstances.
- Probably less plausible, if they can figure out what data is passing through the board, then there is potential to engineer side-channels in the hope that they can achieve another compromise that can leverage it. Maybe they never get the chance to take advantage, maybe they do. Or if e.g. they can find an input that an adversary can potentially influence by how they engage with the plane, use that to trigger failure as above.
I'm assuming they're properly inspected and tested on receipt, but wires on circuit boards can interfere with each other in messy ways if you exceed tolerances even a little bit. I recall an amusing case some years back where someone used genetic algorithms to lay out features on an FPGA and got a very good solution that was totally un-reproducible: it turned out their GA had optimized to take advantage of quirks of that one specific FPGA that didn't work on other FPGA's of the same model, by combining things in ways it hadn't been designed for. It seems it's very much possible to design chips that superficially looks like it should act one way but where it acts differently in certainly circumstances.
Doing so in a way that's exploitable without being caught out is probably much harder, but I share your skepticism.