Introduction to High-Performance Scientific Computing (2014)
pages.tacc.utexas.edu
pages.tacc.utexas.edu
Quite a few equations and pictures are not rendered correctly online; I found the PDF version of the book from Mr. Eijkhout's official site: http://pages.tacc.utexas.edu/~eijkhout/Articles/EijkhoutIntr...
PS: In case some people are interested in these kind of topics (high-performance computing, simulations, and computational physics) and live in Switzerland (or plan to study there), the CSE major at ETH Zürich covers almost all the presented topics in Mr. Eijkhout's book: http://www.rw.ethz.ch/ Disclaimer: Got my degree in CSE from there.