Yes, once you start the search a directory corresponding to the date of your run will be created inside the saves directory. Inside this directory all your models and progress will be saved automatically (you can later resume the search by changing save_folder value inside configuration file). Once the search is done you will find best_topology file which will containt the topology with its weights. Furthermore, inside the deepswarm.log file you will see all the previously evaluated models with their loss/accuracy values.