Actually no, KMT was at war with CPC. By unification, KMT meant (notice the past tense here) taking out CPC and rule mainland themselves.
This position has changed 180 degrees in recent decades. The unification now KMT is promoting is essentially just give up and let CPC take over.
Notice KMT is a foreign political party that originates from mainland China.
Taiwanese people never had a say in that (Taiwanese social elites were slaughtered by KMT) before DPP became a real political party that's born and raised in Taiwan.
Ma Yingjiu's statement was to maintain KMT's legitimacy as a party in Taiwan, that is, through a country named ROC.
However, for Taiwanese. Our country is called Taiwan. And that's how we recognise ourselves long before 1911.