Reliable novelty: New should not trump true
journals.plos.org
journals.plos.org
The other solutions presented were also good though. Making the data cleaner for other to analyze is always a good thing, especially in the "machine learning" age.
The idea is extremely great but I believe this could be difficult to implement at a publication level.
While in many cases scientists currently keep what they're working on "mostly secret" until it's published, in fact lots of their friends and colleagues have a pretty good idea of what they're doing and would be in a position to ask hard questions if they tried to take your approach.
Also you could tie the release of funds to publication of expected methods.
“We thank reviewer 3 for the insightful suggestion...” (ok now copy paste the results that we cut for submission)
Ha ha only serious. Otherwise you get “helpful suggestions” like “run another few phase III trials first”
First off, you’re describing premeditated, wilfully fraudulent behaviour. I suspect a lot of the problems are either less deliberate (you react to new information by making changes to your hypothesis or protocol without stopping to think what that does to your experiment’s reliability), crimes of opportunity (“this is so close, there’s no harm in fudging it a little bit, right?”) or a combination of both. It’s ok to enact rules that fight pervasive small issues while doing nothing about rare malicious behaviour!
Even the malicious behaviour would become much harder though. First off, the strategy you described only works for setups where the data collection stage is relatively short. If it takes a long time, then the fraudster’s timelines start looking suspicious. Second, that type of behaviour could really harm you if caught.
https://dynamicecology.wordpress.com/2013/10/21/two-stage-pe...
http://neurochambers.blogspot.com/2013/04/scientific-publish...
Personally as a researcher, I think the idea is definitely a good one.
That may sound pretty agile. It is! You're absolutely right that this is an excellent match! The issue is that while agile may work pretty well for software dev, it perhaps doesn't work so well for science. It's given rise to a number of abuses.
It might also be noted that researchers doing experimental design are often quite familiar with their field, having gotten their hands dirty in a problem domain repeatedly.
To prevent that from happening, all the experiments that failed need to be reported too, and the link between them has to be obvious.
If this issue matters to you, I would encourage you to support the AllTrials campaign; they have done stellar work in exposing publication bias.
We had procedures so that when we came up with a result, it could be validated and we made sure we didn't do anything that could have tainted the research.
At one extreme you have the really crappy journals that publish nonsense, at the other the really "prestigious" journals that are more like tabloids reporting exciting sounding conclusions with totally inadequate methods sections.
In the middle are the topic-specific journals that you need to read to guess what they did to get the "exciting" results.
"Science" in the late 1990s and early 2000s is the absolute worst example of this.
My only systematic complaint here is that short format means much of the substance has to go in an inconvenient supplement, but that's hardly unique to Nature and Science.
https://www.nature.com/articles/s41586-019-1112-8/figures/5
They’re utterly incomprehensible to my lowly engineers eye and seem deliberately designed to look as complex as possible.
What do these kinds of images and plots tell us of any value?
It tells you "p38γ is essential for cell cycle progression and liver tumorigenesis". You have to be blind not to see that.
It's such a perverse vicious cycle that can't seem to be broken...
I find that asking why something “should” be XYZ is much more enlightening, both for the writer and the reader, in terms of exposing structural problems that make it so.
“People seldom do what they know to be right. They do what is convenient, then repent” —attributed to bob dylan
(Corollary: make the “right” thing the least inconvenient thing to do, and the odds of people doing it will rise appreciably.)