It has basically been the case for every AV1 advocate to compare about video codec using commands that doesn't make sense and benchmarks that were meaningless. Actually that is not strictly true because this happen with every On2 codec prior to their acquisition from Google.
You could also get much higher VMAF scores if you put some time into x264. x264 was never tuned for VMAF, I wish it had a mode just like SSIM and PSNR. But then those were done during early days just to prove a point. I doubt anyone on x264 cares about it.
As much as I like VMAF, and I thought we finally made something with Big Data and Machine Learning so we don't have to rely on PSNR and SSIM, VMAF it is still far from perfect. But my guess Netflix will constantly refine the model and add more improvement to it.