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I've been working on a similar project, but I've been moving away from the tree structure lately because I found it too rigid.

I don't think all my ideas fit into a tree.

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It's a top-down approach. The question is, can your ideas be subdivided into small(er) tasks?

What if my ideas are smaller parts of different things (i.e. a cycle, which can not be in a tree)?

Maybe I'm thinking about it the wrong way.

A cycle is a linear process, which is repeated. You can take the (x) steps of your cycle and make a heading out of each, and then divide those stages into their smaller steps.

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