The big oceangoing voyaging canoes like Hokule'a are double canoes so they are symmetric, unlike outrigger canoes. There still might be an advantage to shunting depending on what kind of sail the canoe is using. According to Wikipedia, some types of lateen sails (of which the crab claw sail is a variant[1]) suffer from a "bad tack" due to the position of the mast[2], which shunting would address.
I don't think hokule'a is shunted, but I'm not actually clear on that. Hokule'a isn't a perfect replica anyway since it's built of modern materials.
[1] https://en.wikipedia.org/wiki/Crab_claw_sail
[2] https://en.wikipedia.org/wiki/Lateen (look for "bad tack")