My "favorite" bug on 6.9 is that if number of symbols in your binaries exceeds some magic limit, workbench will fail 100% of the time to connect to the remote debug server... We exclusively use logs to debug on VxWorks.
Another "favorite" feature of VxWorks was how they disabled floating point by default in tasks (at least on the LEON and PPC). Always led to confusion and frustration by someone new to the platform.