The Bart cost was $1.586 billion (according to Wikipedia) or around ~$10 billion of today's dollars.
Let say that back then we had put that money ($1.586 billion) into an annuity in perpetuity and given the money each years to the riders so they will find alternative means of transport.
So if instead of building bart back in the 70's we had put the money into a perpetual annuity, we would be receiving the sum of $63.5 millions a year from the annuity (your own numbers seem to indicate a 4% yield). That is less than 50 cents per ride (according to Wikipedia Bart gives 129 million rides a year).
I don't think the cost is insignificant compared with the level of economic activity that the 400.0000 daily riders generate for SF and the Bay Area in general.
And now imagine 20 years from now how much $63.5 millions a year will buy you compared with the benefits of mass transportation.