The idea is that all program listings are essentially just lists of things, including other lists: A Javascript source file can be thought of as a list of lines, or more semantically a list of statements and expressions. Function calls are just the name of a function and a list of arguments. Each different kind of statement or expression has its own kind of syntax: a `function(baz) { yadda(baz); }' expression uses different syntax than a `if (something) { yadda(foo); } else { blah(bar); }' statement. S-expression languages just use one kind of syntax for everything, so you can do `(lambda (baz) (yadda baz))' and `(if something (yadda foo) (blah bar))' instead.
This uniformity of syntax allows most of the interesting features of lisps, like that everything is an expression (returns a value), and macros, which are kind of a souped-up version of C preprocessor `#define's.