Not really, because the general public won't take such care with the differentiating. The more scientists deliberately exterminate or cull animals, the more the public will grow accustomed to the idea of humanity taking such an active violent role in the environment. And the more the public grow accustomed to that idea, the more they'll be willing to fall in line behind politicians who try to do the same. Particularly when those politicians claim science as their justification (numerous disastrous examples in the 20th century.)
The ethical analysis performed by scientists looking to justify exterminations should include the social impact of their actions. Scientist and engineer sorts often loath considering such factors.