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"This doesn't debunk anything. The thesis was that people would unquestioningly obey "an authority figure".It debunks precisely that. The phenomena of obeying authoritiy figures is not ideologically neutral as the popular narrative suggests. Rather people make a decision about whether or not to comply with the authority figure based on whether or not their personal ideology aligns with the goals and motivations of that authority figure. In other words, it's not unquestioning obedience. People question the circumstance, question the motivation of the authority figure, and then make a decision about whether or not they will comply.
To put a finer point on it, people who follow orders from Nazis do so because they are themselves Nazis. People who follow orders from scientists do so because they believe in science. Demonstrating that x% of the general population near [university] during [year] follow the orders of scientists does not demonstrate that x% of that same population would follow orders from Nazis. This is contrary to the popular Milgram narrative that was sold to the public.