The way a Cambridge PhD works, I believe – and I think this is the same across the UK – is that the
only things you actually have to do are;
a) write a thesis
b) find examiners (internal and external) who agree to examine you; if you're a grad student this is your advisor's job. The examination is by thesis review followed by pass/pass-with-corrections/fail oral exam. It can take as long as it needs to (typically three to four hours), and is in private; it's not like public defenses elsewhere, which are for show, this is a real live-fire exam and I know people who have failed
c) pass
d) ... that's it; there is no part d)
In particular, there are no quals or other requirements; the degree is an old-school medieval masterwork deal. You submit your thesis and get examined on it. Typically you write your thesis through an apprenticeship to your advisor, but that's not actually required, it's just conventional; in Aubrey's case, the thesis was the book and the research proceeded by unusual means over a long period of time. Nevertheless, he got examined in the same way everyone else does, he passed like everyone else did, so he has his PhD.
(source: my own memory, I know Aubrey and have worked with him on a couple of non-science things fifteen years ago, and I got my PhD from Cambridge through the traditional route of being a grad student – thesis at https://aspace.repository.cam.ac.uk/handle/1810/218854?show=...)