Indonesia, one of the poorest and most religious countries, is also one of the least violent (#57; USA: #24).
The former anti-corruption chief of Indonesia was jailed earlier this year for conspiracy to murder. I could imagine that if he's not the only government official organizing murders, then that might not reliably be reported to the police.
(This is poorly-informed speculation and I wouldn't be surprised if some knowledgeable person writes a scathing correction. Better information would be appreciated.)
I'm an atheist too, but I still believe in good statistics.