In my expereince you shouldn't even touch the black magic stuff unless you're a small org or it's a throwaway app.
Linq with the EF is great for simple queries and updates, anything else and you're in for serious performance problems as soon as the app scales. Better to drop to normal SQL for complicated data loading.
Even MS can't write decent LINQ queries, their ASP.Net identity provider is now the most 'expensive' bit of our app now because they used expensive LINQ queries instead of using raw SQL queries. Admittedly our use-case is abnormal as the specific problem we have is that because of the way users are added their password gets reset almost immediately, as they're invited by an organiser. It also means new users are constantly being added. When the password reset is saved it completely unnecessarily "verifies" the update by making sure the username and email are unique, which means two UPPER()s and CONTAINS()s on string fields. Unlike the old provider there's no usernamelowered field already in the db to avoid this.
We can fix it by over-riding these queries, but it's annoying that the ASP.Net team took a core framework piece that was very performant with fast performing SQL and made it substandard. At least I can look at the code now ;).