Do you really think they'd be allowed to call it an Egg McMuffin if it didn't have real eggs? It would be a pretty clear-cut case of false advertising.
Yeah... your Egg McMuffin probably has SOME egg in it, but that's about it.
[0] http://static6.uk.businessinsider.com/image/54c920c1dd08950d...
Apparently it is has 1/3 of you daily allowance of sodium as well.
McDonald's, as long as you approach the menu reasonably, is honestly probably one of the better fast food options - not something you should be eating every day, but once every couple of weeks probably isn't going to kill you any faster than anything else you do.