"To keep our prices as low as possible, cashier’s checks or cash are the methods preferred. Credit cards are accepted on a case by case basis. Human resource departments or divisions of self-insured companies can make other arrangements if necessary."
(They also have a partnership with some sort of personal loan/financing company which presumably would take credit cards or bank transfers.)
"Cash only" means "not insurance claims" in this context - usually when you go to the doctor you give them your insurance information and your expected copay the doctor (actually their admin staff) then submits a claim to your insurance company for payment. If the company doesn't pay, or pays less than expected, they will bill you.
Large "cash" transactions aren't a problem.
Multi thousands of dollars+ "cash" transactions are done all the time (such as a down payment on a house), you go to the bank and get a cashier's check. There's no reason you couldn't take out cash instead of getting a cashier's check, but it wouldn't be secure or practical. And your payee may have an issue with accepting physical cash from a risk perspective.