Yes Java has a lot of problems but they are mostly ones that have workarounds and aren't fundamentally dealbreakers. A few example issues are assignment isn't final by default, @Override isn't required to override methods, you can't have abstract static methods (sort of can workaround this now get this now with default interface methods). Java is basically just a really un-opinionated language that requires careful practices to wield it properly (see Effective Java by Joshua Bloch) but other than that it isn't a completely terrible language and you can write some really robust, easy to read code with it.
I would also have a lot more time for this article if the author actually took the time to explain the motivation behind the *FactoryFactoryFactory class instead of just discounting it without explanation and using it as the proverbial Straw Man for his article. I'm sure something this unusual must have a very interesting reason as to why it exists (I'm taking him literally here and assuming he isn't just exaggerating for comic purposes).