She is criticizing "unfiltered trash-talk [on social media]... [and] online vigilantes [who] are attacking individuals, their research programs, and their careers".
It's the same tension the article is referring to, between civility and public discourse. On one hand, you'd really like an open dialog about the quality of evidence presented. On the other hand, there's a real price to be paid when people are too worried about public humiliation to risk doing science on certain questions or working with certain people.
As the quote from Jay Van Bavel put it, "It's become like politics — we’ve created two camps of people who shouldn’t be in two camps in the first place"
This point resonated with me even though I'm on your side of those politics. What effect would it have on the OSS community if any even slightly bad code you write could end up in a hit piece published by The Atlantic, and if fact you witnessed people on Facebook saying your colleague, who maybe did write some kinda bad code that one time but is on the whole competent, is a charlatan who doesn't deserve the title of "programmer"?