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So it becomes a matter of whether or not you can achieve good coverage of your execution paths to account for all possible filesystem touches? Further invocations of "cde" with respect to the same "cde-package" folder will actually append to the "cde-root" file system copy so if you could manage to canvas your program's execution paths then the resulting file tree copy should be sufficient?

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You're right it is a question of coverage of execution paths, but that's a non-trivial problem.

Have a look at the lengths that AFL uses to get even close: http://lcamtuf.coredump.cx/afl/

[tl;dr it intruments execution while using a genetic algorithm to mutate inputs optimising for code coverage]

Statically determining dependencies is a lot easier and a lot more reliable! Particularly as you only need the base image once, and any extras on top are another layer on the Docker FS.

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