Yes, there are a few things apache is remarkable about - the npm-itk engine could run as user processes, which was nice for shared hosting - but all the problems with it - slowloris, anyone? - simply outweights the benefits.
Shared hosting should be containerised or vm-ised instead and run on nginx/lighttpd/cherookee/etc + php-fpm 7.0 which will save you a lot of headaches and CPU cycles.
.htaccess can be just as much a benefit as a curse.
(Note: WordPress is completely nginx + php-fpm friendly.)