Ask HN Sole Proprietors and Freelancers: How do you manage your money?

I'm a freelance programmer, and I've got an incredibly cumbersome bookkeeping method:

1) Money comes into my business PayPal account or 2Checkout account

2) I log in at the end of the day and move money from PayPal to Chase Business Checking (2Checkout does this automatically once a week)

3) I log in at the end of every two weeks and move my "salary" (just enough to live on) from Chase Business to my Chase Personal account.

Of course, this is a pain in the rear to keep track of, and my calendar is littered with notifications to move money around. Obviously, this is suboptimal. Checking my finances themselves is a little better, since I've got Mint and InDinero at my disposal, but I can't use either to transfer money around.

So, HN, how can I streamline this?