Improper use of metadata to track down individuals in a confidential survey about mental health and substance abuse would end a scientist's career. MIT did it.
Collective punishment of a group for the actions of a few is an educational and social antipattern. MIT did it.
An "end justifies means" mentality is a classic tool used by the strong against the powerless. MIT embraced it.
Removing completely innocent people from their homes and their supportive social structure, while MIT's right, would face justified outrage in any public context.
Using these tools on anyone, let alone the students you thought brilliant and worthy enough to admit, teaches a mindset abusive of power and lacking in humanity. A mindset that is all too common in our society.
MIT has plenty of honorable and fair people. If they didn't know enough to stand up for Senior House specifically, why didn't they stand up against the tools that the administration used that they know are wrong?
I have found "we teach as we live, we live as we teach" a pretty powerful and positive philosophy.