Mosaicism is not inherently bad. It is definitely case specific. The current technology just doesn't allow much control over how much mosaicism you will get, on top of the off-targets, which is your point basically.
The same mosaicism phenomenon which cause tabby cat's coat (especially callico) can be seen in human and would cause that individual to sweat by plaques, instead of the entire body. So you could imagine a scenario where someone would like to select a specific eye, or hair, or skin pigmentation, and end up with inequal pigmentations or a patchwork. That actually sounds cool...
In the case of an autoimmune disorder, like type-I diabetes or a blood disorders like beta-thalassemia, you would absolutely need to hit the proper germline which is responsible for creating your diseased cells. So that's a hit or miss, there is no inbetween. If you do have a hit, then while this germline is dividing and differentiating, it would need to reach a threshold at which the disease becomes asymptomatic. I don't what that number is for any of two diseases I just mentioned, but I would think it is higher than 50% of your cells that need to be corrected, so you would need to successfully hit more than one allele in your succesfully hit germline population that will become blood making cells.
It's a lot of moving parts, which needs to align correctly. That being said, I am optimistic that we will eventually get there. I have some doubt about the scientific pertinence of that "breaking news", i.e. I just don't believe they have accomplished anything that wasn't obvious, but being an optimist, I am sure that not all the ink will be a waste.
Nice question.