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Would that DS-lite solution explain why VPN connections to my AWS vps seem really spotty on ipv6 connections?

DS-Lite[0] means you have proper native IPv6 but only a tunnel on top of that for v4, so it's unlikely that IPv6 connections are negatively affected by this setup.

[0] https://tools.ietf.org/html/rfc6333

Edit: On the other hand, if connections via IPv4 were spotty I would not hesitate to suggest problems with NAT or path MTU.

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