Also if you factor in a performance critical software for 100000$ that runs on that single node, you will buy the fastest hardware that you can get for a few thousand dollars more.
But Intel does the same. The 2-socket http://ark.intel.com/products/91768/Intel-Xeon-Processor-E5-... is superior in every single aspect to the 4-socket https://ark.intel.com/products/93796/Intel-Xeon-Processor-E5... but yet the 4-socket CPU is priced 1.6× higher...
Except density :) If both Intel and AMD do this, then I guess data centre admins do see the increase in density as worth the extra cost.
Does this increase in density have yet more additional cost implications in terms of cooling?
Not all tasks can be split across nodes. If you need 4TB in ram you have to get the more expensive quad socket CPU.