As far as we can tell. Pex is just polyethylene or (C2h4)n - there is nothing about that chemical formula to be particularly concerned about. It doesn't leach anything - when pure water is desired it the most common pipe to specify as it is cheap and works well (glass is better but that is mostly because glass does not allow air to through to dissolve in your water - and obviously more expensive)
The alternative is copper and cPVC. cPVP is just another plastic. Copper leaches copper into your water (though not harmful for most purposes), and is attacked by common water ph to corrode and ultimately break requiring replacement (though this takes about a lifetime). Copper is more expensive - 10 feet of copper pipe will cost as much as 100 feet of pex, and you have to join the copper every 10 feet: more expensive labor.
The claimed worry is impurities from manufacturing exposes workers to them when the pipes are first turned on. Note that there is no particular reason to believe those objections do not apply to approved pipes. My opinion is they don't like the idea of pex because it is less labor which means less money for them.
I personally use pex for all my plumbing in my house. It is cheap, quick and easy.