It appears that we might have jumped on the transistor metaphor too quick and to intensely. I believe not everything is binary in the brain, even if the resulting executive action is. Patterns, for example, might not be.
For example, "Almost everybody accepts that the brain does a tremendous amount of analog processing. The controversy lies in whether there is anything digital about it." [1]
[1]: http://www.rle.mit.edu/acbs/pdfpublications/journal_papers/a... (page 30 of the PDF, labelled 1630)