It seems likely that they would as the purpose of the virtual machine seems to be to make porting to other systems easier. If you can extract the data files from the SNES version (or another port) then it is possible that the pack_tool (from
https://github.com/RyanMallon/TheLostVikingsTools) will be able to extract the chunks containing the virtual machine programs. The format of the virtual machine programs might be a bit different. For example the load/store instructions for globals in DS may not be directly portable to other architectures (at the very least I would expect global offsets to be different). The rest of the vm design appears to be fairly portable though.