For example, it's great that we can get products delivered overnight from Amazon. However, as you point out, that is effectively a public subsidy of Amazon's business model, and that has negative effects too. Subsidizing public road infrastructure makes shipping products across the country artificially cheaper compared to making and selling them locally. That essentially strips away an advantage local retailers and manufacturers would otherwise have against big, national companies like Amazon.
Indeed -- my hope for "dig once" policies would be that they have an opposite effect on competition; namely, that national-scale incumbents (who can currently afford to throw a million dollars here or there to put in fibre of their own in a new region/market) can get effective competition from local ISPs (who don't have a comparable ability to throw cash around).
[1] http://www.frontiergroup.org/reports/fg/do-roads-pay-themsel...