Scrolling is one of those things that (in my opinion) get calibrated in the brain for hand-eye co-ordination. Which is why (again IMHO) there are religious wars fought over, for example, Apple's trackpads. This stuff is important. It can be a jarring experience when scrolling suddenly doesn't work. Flip side is, I'm sure some people don't care.
There's nothing more annoying than a web designer saying "I know better than you" and re-implementing features. Because they're usually wrong.
EDIT: Would people accept it if each webpage re-adjusted your mouse pointer speed and acceleration? Is there any difference between one mouse function and another? Why do web designers think they have the right?