Their decisions, including the legal reasoning and analysis, are largely themselves classified, and are (like most warrant application procedures) non-assertive, which presents a significant problem of transparency. (Regular warrant application processes, insofar as they support what eventually turns into criminal prosecutions, at least are aimed at feeding into adversarial proceedings which can reject their results, which mitigates the problems stemming from non-adversarial proceedings.)
From 1979 to 2013, the FISA courts have denied 12 warrants [1]. That a FISA court actually denied the initial surveillance on Trump Tower, and Obama's DOJ then pushed it through, should be an enormous red flag to people.
1. https://en.wikipedia.org/wiki/United_States_Foreign_Intellig...
That's also true of you change the time period from 2003-2013, since it denied zero from 1979-2012. (It's funny that the low rate of denial over the whole life of the FISC has been cited to support the idea that the court has become a rubber-stamp of the post-9/11 surveillance state, when all of the actual denials are in the post-9/11 period.)
Again, if I am off base and there was additional approval for any sort of surveillance on the data of the entire USA, I am very interested in learning more.