I wander what phones / computers CIA operatives use - do they have special patched versions which address the zero day exploits they are aware of.
So they'd probably use off the shelf software and mitigate risks in other ways.
(Ex: not bringing smartphones to sensitive meetings)
If so, a diff between the "CIA version" and the "civilian version" would be highly instructive.
This is an example of security through defense in depth; patching is one layer of defense, but if you can't patch there are other mitigating actions you can take to protect against (especially) known threats. It allows someone with an offensive and defensive mission to simultaneously use exploits while not being vulnerable to them.