DNA Fountain – Capacity-approaching DNA storage
dnafountain.teamerlich.org
dnafountain.teamerlich.org
Now only need to increase the throughput and price of DNA synthesis by 4-6 orders of magnitude
With computing power increasing 1 order of magnitude around every 5 years (Moore's law), this might be reality by 2027.
An antecedental story is computer graphics, it only took 20 years for to go from idea to reality. Learned a lot listening to a talk at work by Alvy Ray Smith a couple years back. The true poineers are building now not for what is possible now but for what will be possible tomorrow. This article gives some context https://www.forbes.com/asap/2001/0528/052.html
This is another interesting perspective on time scale of orders of magnitude of computing power https://en.m.wikipedia.org/wiki/Computer_performance_by_orde...
The data storage is almost totally irrelevant. When you improve DNA synthesis by 3-4 orders of magnitude, you make it dirt-cheap to synthesize whole custom genomes, hyper-optimized for anything you wish. (Currently, the state of the art is synthesizing an E coli genome takes multiple years and a large international collaboration.) CRISPR only lets you do a few edits at a time at most, in some parts of the genome; imagine being able to do tens of thousands of edits as easily as 1 edit. At that point, you're hardly even 'editing', you're designing organisms as a whole. The Church lab has some astounding proposals for things you can do when you are able to synthesize a whole genome, like cleaning out all the retrovirals, movable elements, recoding the genome for total viral immunity, on top of the obvious stuff like eliminating all mutation load or increasing specific traits by dozens or hundreds of standard deviations. The mind boggles.
what's the fastest you can read out DNA using sequencing?
Actually, this would not be as trivial as it sounds. Especially the unlimited coping.
There are many forms of DNA. Single stranded, double stranded, circular etc. etc. I assume we were talking about non-circular DNA. ds/ss does not matter, for PCR you would have to go ds anyway. You realize that strand shortening would be a problem? I could think about ways to correct this but it is not trivial.