It sounds like the weakness in the process is that the tool they were using permitted destructive operations like that. The passage that stuck out to me: "in this instance, the tool used allowed too much capacity to be removed too quickly. We have modified this tool to remove capacity more slowly and added safeguards to prevent capacity from being removed when it will take any subsystem below its minimum required capacity level."
At the organizational level, I guess it wasn't rated as all that likely that someone would try to remove capacity that would take a subsystem below its minimum. Building in a safeguard now makes sense as this new data point probably indicates that the likelihood of accidental deletion is higher than they had estimated.