Pypy has pretty bad compatibility with a lot of C extensions (numpy comes to mind), this makes a lot of larger codebases unusable on Pypy.
Also Python 3 compatibility has been pretty bad.
It seems like the Mozilla grant that happened a while back ( https://news.ycombinator.com/item?id=12255586 ) has really pushed Python 3 support forward a lot.
I think we may be getting closer to Pypy having more of a prescence in the server space soon if it continues to push forward at a similar pace.