A Weapon for Readers (2014)
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A sort of paranoid fear of distorting my subsequent readings of a book has always made me hesitate marking them directly--a second reading is often a chance to catch subtitles you missed the first time around--I've always feared that having my annotations screaming at me while reading would render finding these subtitles impossible, those slippery nuggets making their escape under rivers of pen ink.
Ultimately, I couldn't deny myself the inherent use-value of direct annotation--so it won out over my fear. Yes, it's true that my annotations will perhaps make me miss things I otherwise might've noticed on a second read, but they'll also remind me of ideas I'd previously had which might've otherwise been lost to time, or are more difficult to parse out and re-associate with a given piece of text using the other methods.
So I accede to the wisdom of DFW, a great lot of famous scribblers, and Tim Parks; I read with pen in hand and ink on page.
Examples would be technical books and philosophy books.
Otherwise, what funny coincidence in the examples of this article: C.S. Lewis "Lion ..." which I just finished reading to my daughter yesterday, and DFW, who we just finished electing Pres. Gentle.
The Great Concavity - it's coming.